BLASTn using R
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Prateek • 0
@b13bb491
Last seen 2.6 years ago
India

Hello, I have around 2000 nucleotide sequences stored in each row in an excel sheet. I want to run BLAST over each one of them individually and extract the "Description" of the first hit.

Like for Example: Suppose on NCBI BLAST website I insert one query sequence and hit BLAST with Homo sapiens as organisms. I extract the description of the first hit and paste it aside the sequence in the excel sheet (same round different column). Rather than doing this one by one, is there any package in R which helps me capture the description of individual sequences. By description I mean gene name or gene symbol

Thanks

SequenceMatching SequenceAnnotation • 894 views
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