flowDensity Unable to find inherited method when given a flowFrame Object
0
0
Entering edit mode
nmchavez • 0
@083cd1b8
Last seen 2.4 years ago
United States

I am attempting to make some simple gates on single colored controls. I first read in all the .fcs files of interest using read.FCS

frames <- lapply(dir(fcs_path, full.names = TRUE), read.FCS, truncate_max_range = FALSE)

I know that the third frame in this list is the single colored control for CD3, so I pull that frame from the list:

CD3_frame <- frames[[3]]

This gives me a single flowFrame:

class(CD3_frame)
[1] "flowFrame"
attr(,"package")
[1] "flowCore"

Now when I attempt to use flowDensity in its most basic form, I get this error.

CD3_frame.gate <- flowDensity(CD3_frame, channels = c("FL4-A", "FSC-A"),
                              positions = c(T, NA))
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function ‘flowDensity’ for signature ‘"flowFrame", "character", "missing", "missing"’

I have successfully used flowDensity in the past using this same flow and have not run into this problem. Is there something obvious that I am missing here?

flowCore flowDensity • 792 views
ADD COMMENT

Login before adding your answer.

Traffic: 1386 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6