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Hi all,
I'm trying to use motifStack R package to plot amino acid specific positions but analysis but I’m facing a problem with the x axis positions’ titles, the numbers are not equal to the position number that I want.
For example, in the photo attached below, the positions are assigned from (1:12) automatically but these are not the positions that I have in my matrix and data sets. How can I change the positions numbers to represents what I want please?
Any help is really appreciated!
Hi Dr. Jianhong, Thank you very much for your reply, its really appreciated!. I tried the code and it worked perfectly!!! thank you again for doing such amazing package! I also have another issue please, I'm plotting amino acid frequency and I want to change the y label to reflect frequencies from 0 to 100 instead of the default option in the package which is from 0 to 1. Can you please help me with this? Many thanks for your help and efforts. Regards Marwah
Please try to reinstall the development version via the github
And then try:
It is reasonable to change the y-axix as you described. In current stage, I did not have other plan to plot y-axis with user defined values.
Jianhong.
Hi Dr Jianhong, Thank you so much its working now, I really appreciate your help. The Plots looks nice now. Regards Marwah