Does bump hunter support Infinium Mouse Methylation BeadChip Array data?
0
0
Entering edit mode
ZHAOHUI • 0
@d17d1947
Last seen 2.7 years ago
United States

I am trying to use bump hunter to do DMR analysis against Infinium Mouse Methylation BeadChip Array beta values. To this end, I have to convert the beta value dataframe to GenomicRadioset object using method (https://rdrr.io/bioc/minfi/man/makeGenomicRatioSetFromMatrix.html ) However, the default annotation is IlluminaHumanMethylation450k. I wonder if Infinium Mouse Methylation BeadChip annotation data (https://support.illumina.com/content/dam/illumina-support/documents/downloads/productfiles/mouse-methylation/infinium-mouse-methylation-manifest-file-csv.zip ) is supported by this function. If the answer is yes, would you please give me some advice as to how to use the mouse annotation in makeGenomicRatioSetFromMatrix( ). Thank you very much.

bumphunter • 874 views
ADD COMMENT

Login before adding your answer.

Traffic: 630 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6