library(MatrixEQTL)

useModel = modelLINEAR

SNP_file_name = paste("/Users/user1/Desktop/Plant_1/eqtl/209_40.txt", sep = "")

expression_file_name = paste( "/Users/user1/Desktop/Plant_1/eqtl/Gene_expression.txt.", sep = "")

covariates_file_name to character() Error: unexpected symbol in "covariates_file_name to" covariates_file_name = character()

output_file_name = tempfile()

pvOutputThreshold = 1e-2

errorCovariance = numeric()

snps = SlicedData$new()

snps$fileDelimiter = "\t"

snps$fileOmitCharacters = "NA"

snps$fileSkipRows = 1

snps$fileSkipColumns = 1

snps$fileSliceSize = 2000

snps$LoadFile( SNP_file_name )

Error: Error in dim(data) = c(length(rowvals[[1]]), length(rowvals)) : dims [product 48375] do not match the length of object [48362]

This is not a Bioconductor package.

You can try to find the maintainer by typing in R: maintainer("MatrixEQTL")