Entering edit mode
The plotIndiv
function works with the lattice style on my data but doesn't display a plot when the style is changed to "3d". Please could you help me fix this.
pca <- pca(RESP, ncomp = 6, scale = TRUE)
x11()
plotIndiv(pca, ind.names=Samples,
group=as.numeric(as.factor(class)),
style="3d")
sessionInfo( )
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.3 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8
[4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rgl_0.108.3 mixOmics_6.18.1 ggplot2_3.3.5 lattice_0.20-45 MASS_7.3-54
[6] R.matlab_3.6.2 plsgenomics_1.5-2 matlab_1.0.2
loaded via a namespace (and not attached):
[1] spam_2.7-0 xfun_0.28 tidyselect_1.1.1 reshape2_1.4.4
[5] purrr_0.3.4 colorspace_2.0-2 vctrs_0.3.8 generics_0.1.1
[9] htmltools_0.5.2 viridisLite_0.4.0 utf8_1.2.2 rlang_0.4.12
[13] R.oo_1.24.0 pillar_1.6.4 glue_1.5.1 withr_2.4.3
[17] R.utils_2.11.0 BiocParallel_1.28.2 RColorBrewer_1.1-2 matrixStats_0.61.0
[21] lifecycle_1.0.1 plyr_1.8.6 stringr_1.4.0 fields_13.3
[25] dotCall64_1.0-1 munsell_0.5.0 gtable_0.3.0 R.methodsS3_1.8.1
[29] htmlwidgets_1.5.4 knitr_1.36 fastmap_1.1.0 parallel_4.1.2
[33] fansi_0.5.0 rARPACK_0.11-0 Rcpp_1.0.7 corpcor_1.6.10
[37] scales_1.1.1 BiocManager_1.30.16 jsonlite_1.7.2 RSpectra_0.16-0
[41] gridExtra_2.3 ellipse_0.4.2 RhpcBLASctl_0.21-247.1 digest_0.6.29
[45] stringi_1.7.6 dplyr_1.0.7 ggrepel_0.9.1 grid_4.1.2
[49] tools_4.1.2 magrittr_2.0.1 maps_3.4.0 tibble_3.1.6
[53] crayon_1.4.2 tidyr_1.1.4 pkgconfig_2.0.3 ellipsis_0.3.2
[57] Matrix_1.4-0 viridis_0.6.2 R6_2.5.1 boot_1.3-28
[61] igraph_1.2.9 compiler_4.1.2