Hi, Is it possible to get the list of overlapped peaks (min, not merged) when using the findOverlapsOfPeaks(data1,data2,connectedPeaks="min") in the ChIPpeakAnno library? findOverlapsOfPeaks(data1,data2,connectedPeaks="min")$peaklist reurns just the merged peaks, but I want the list of peaks as plotted in makeVennDiagram(); that is connectedPeaks="min". thank you! By the way, connectedPeaks="keepAll" didn't do the trick.

thank you all!

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