Hi,
I'm not sure if I'm doing something wrong, but can't seem to start the GUI with Prostar (as indicated in the manual). Followed the instruction in Prostar manual (i'm using Rstudio in linux) and looks like I have all dependencies. Bioconductor install seems ok since I've validated my BiocManager and get a "TRUE" output.
Can someone let me know if I'm missing something or could it be an issue with using R 4.1.2?
Thanks
please also include the results of running the following in an R session
library(Prostar)
Prostar()
Error in Prostar() : could not find function "Prostar"
sessionInfo( )
R version 4.1.2 (2021-11-01) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.3 LTS
Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] Prostar_1.26.1
loaded via a namespace (and not attached):
[1] BiocManager_1.30.16 compiler_4.1.2 tools_4.1.2
```
This is a little bug with the Prostar() function. It will be fixed in the version 1.26.3 which will be available in a few days on Bioconductor
Thank you for answering.
I've just updated to Prostar v1.26.3 and confirm that the Prostar() command now works in R for me on linux.
Best regards
*** With v1.26.4 the Prostar() command do work and open in browser.
Altough I'm having new issues with data convert since.
see post Problems with Prostar v1.26.4 - issue with convert data prior to filtering
Hi, I have installed the "Prostar" package, and loaded in my rstudio work session. But, when I trying to use the Prostar() for open a GUI for DAPAR. I recieved an error message - "Error in Prostar() : could not find function 'Prostar' ". Could you give me some advices?
Thanks
Below is the sessioninfo():
R version 4.2.0 Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Monterey 12.3.1
Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] Prostar_1.28.0 BiocManager_1.30.18
loaded via a namespace (and not attached): [1] compiler_4.2.0 tools_4.2.0
Hi, I have exactly the same problem. I'm using R.4.1.2 for Mac. As Benoit suggested, maybe it's an issue with R.4.1.2 (I didn't found R.4.1.0 for Mac) ? Or maybe we made the same mistake (I'm not very familiar with R) ! Thanks !
Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale: [1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] Prostar_1.26.2
loaded via a namespace (and not attached): [1] BiocManager_1.30.16 compiler_4.1.2 tools_4.1.2