AnnotationDbi

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Bogdan ▴ 670

@bogdan-2367

Last seen 14 months ago

Palo Alto, CA, USA

On R/4.0.3, when I do load AnnotationDbi, I do receive the following message (below). Any suggestions please ?

"> library("AnnotationDbi")
Error in value[[3L]](cond) : 
  Package ‘AnnotationDbi’ version 1.55.2 cannot be unloaded:
 Error in unloadNamespace(package) : namespace ‘AnnotationDbi’ is imported by ‘biomaRt’, ‘GenomicFeatures’, ‘annotate’, ‘org.Hs.eg.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ so cannot be unloaded"

```

AnnotationDbi • 2.0k views

ADD COMMENT • link 3.1 years ago Bogdan ▴ 670

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what is your sessionInfo() -- also you could try running BiocManager::valid() to make sure all packages are consistent with each other.

ADD REPLY • link 3.1 years ago shepherl 4.1k

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Thank you. I have managed to get it running by restarting R and changing the way I do call the libraries i.e.

library("UMI4Cats")

library(org.Hs.eg.db)

library("BSgenome.Hsapiens.UCSC.hg19")

ADD REPLY • link 3.1 years ago Bogdan ▴ 670

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