Question

DESeq2 PlotCounts() function

0

Entering edit mode

Nayrouz • 0

@ea088d93

Last seen 21 months ago

Canada

Hello,

Is it possible to label samples when using plotCounts() function? I don't have a lot of samples and so it would be useful to label them.


plotCounts(dds, gene=which.min(res$padj), intgroup="condition")

DESeq2 • 1.5k views

ADD COMMENT • link updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by Nayrouz • 0

score 0 · Answer 1 · 2021-10-21

0

Entering edit mode

swbarnes2 ★ 1.4k

@swbarnes2-14086

Last seen 1 day ago

San Diego

PlotCounts does what it does. Learn to use ggplot, you can add labels with that.

ADD COMMENT • link 3.3 years ago swbarnes2 ★ 1.4k

0

Entering edit mode

Yes I think we show this in the workflow.

Specifically see the returnData argument.

ADD REPLY • link 3.3 years ago Michael Love 43k