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diagnostic test for outliers called Cook’s distance caused DESeq2 (version 1.10 vs 1.30) have big different result? anyone find similar issue?
diagnostic test for outliers called Cook’s distance caused DESeq2 (version 1.10 vs 1.30) have big different result? anyone find similar issue?
There was an addition in 1.21.9, see https://bioconductor.org/packages/release/bioc/news/DESeq2/NEWS
Software changes over time, I'd use the most recent one.
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