Convert SummarizedExperiment to SingleCellExperiment Object
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Gen • 0
@8e62095b
Last seen 2.2 years ago
United States

Hi Everyone!

My project involves annotating my test dataset using SingleR and its reference sets. I want to combine two reference sets available. However, I am facing challenge in this step as these reference sets are different data types- Summarized Experiment Object and SingleCellExperiment Object, SingleR doesn't allow me to merge these.

Is there a way to convert a Summarized Experiment object to SingleCellExperiment Object or vice-versa?

SingleCellExperiment SummarizedExperiment SingleR • 3.2k views
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ATpoint ★ 4.6k
@atpoint-13662
Last seen 2 hours ago
Germany
as(se, "SingleCellExperiment")

Type ?SingleCellExperiment and see the last section of the examples.

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