Question

Identify a scRNASeq cell-population using a bulk RNA Seq dataset of that population?

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curiousmind007 ▴ 10

@d27aed9d

Last seen 2.5 years ago

Germany

Hi,

I have a bulk RNA Seq sataset of a cell-type and now I want to search for this cell-type on an single-cell RNA Seq dataset. How is that possible? Any specific package available?

Thanks :)

RNASeq rnaseq scRNAseq • 1.3k views

ADD COMMENT • link updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by curiousmind007 ▴ 10

score 0 · Answer 1 · 2021-08-09

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Aaron Lun ★ 28k

@alun

Last seen 23 minutes ago

The city by the bay

You may consider using SingleR, see http://bioconductor.org/books/release/SingleRBook/ for details.

ADD COMMENT • link 3.4 years ago Aaron Lun ★ 28k