i got problems reading cel files with affy library
here 's the code
i got following errors :
" Is /home/alambard/celfiles/ABCDE.CEL really a CEL file? tried reading as text, gzipped text, binary, gzipped binary, command console and gzipped command console formats"
and :
"Error in read.celfile.header(filenames[[1]]) : "
```l library(affy) setwd ("home/usr/celfiles") list.files ( pattern = ".CEL") c <- Readaffy()
What kind of array is it? You have a ChIPSeq tag, so it's likely you should be using
oligo
instead ofaffy
.affymetrix snp 6.0 array