Question

How to convert .CEL file to .VCF file?

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jesus • 0

@e77bf1e5

Last seen 3.4 years ago

Mexico

Hi, all

I'm trying to convert a .CEL file to a .VCF file. I know exist bioconductor packages where I can use affy2vcf command, but its all I know. I still have not been able to insert the .CEL file. Someone can help me?

vcf cell affymetrix • 2.2k views

ADD COMMENT • link 3.5 years ago • updated 3.4 years ago jesus • 0

score 0 · Answer 1 · 2021-06-16

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James W. MacDonald 67k

@james-w-macdonald-5106

Last seen 1 hour ago

United States

I don't know of anything within Bioconductor, but after a Google search for affy2vcf (hint), I came upon this github repo.

ADD COMMENT • link 3.5 years ago James W. MacDonald 67k

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Thank you! I'd already seen it, but the problem is that I'm using Windows and I think that code is only for Linux. Thanks anyway!

ADD REPLY • link 3.4 years ago jesus • 0