Rsamtools: how to output base positions on reads

0

Entering edit mode

yuharasatoshi • 0

@9c113504

Last seen 3.4 years ago

Japan

When running samtools mpileup, the "-O --output-BP" option is used to get the base positions on the aligned reads. Is it possible to do the same in Rsamtools?

Rsamtools • 911 views

ADD COMMENT • link updated 3.4 years ago by Martin Morgan 25k • written 3.5 years ago by yuharasatoshi • 0

0

Entering edit mode

Can you add to your question to provide a more complete example of the output that you are after? Have you explored the pileup() command?

ADD REPLY • link 3.4 years ago Martin Morgan 25k

Login before adding your answer.

Similar Posts

Loading Similar Posts

Traffic: 713 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the

version 2.3.6