I have a set of the interested gene list (Arabidopsis. TAIR IDs)

I want to find where these genes are enriched in KEGG pathways.

How can I do this not using online web tools?

How can I download KEGG pathways for the Arabidopsis genome in a CSV file? So later I can use R to work manually.

Arabidopsis thaliana:

library(limma)
ath.kegg <- getGeneKEGGLinks(species.KEGG = "ath")
head(ath.kegg)

Arabidopsis lyrata:

aly.kegg <- getGeneKEGGLinks(species.KEGG = "aly")

The resulting data.frames can be input to kegga to do an enrichment analysis for a set of DE genes.