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Jane Merlevede
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90
@jane-merlevede-5019
Last seen 6.2 years ago
Dear ConsensusClusterPlus users,
Is it possible to add labels (colnames of the data matrix) on the plots generated by ConsensusClusterPlus: dendograms of consensus matrix, tracking plots and item consensus barplots?
It would be nice to see the cluster membership of each sample across the number of tested clusters.
I am using R version 3.3.1 and ConsensusClusterPlus version 1.38.0 this way:
rcc2 = ConsensusClusterPlus(d,maxK=8,reps=1000,pItem=0.8,pFeature=0.7, clusterAlg="hc", title="clustering pearson hclust",distance="pearson",plot="pdf", writeTable=TRUE) calcICL(rcc2,title="clustering pearson hclust",plot="pdf", writeTable=TRUE)
Do you know other R packages that allow bootstrapping both samples and features?
Thank you in advance,
Jane