Question

readDGE function does not exist

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biotech ▴ 160

@biotech-6194

Last seen 7.7 years ago

European Union

Seems 'readDGE' function from the package edgeR does not exist any more, but in the manual is still used.

How is that possible?

edger • 1.1k views

ADD COMMENT • link updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by biotech ▴ 160

score 1 · Accepted Answer · 2016-11-30

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Aaron Lun ★ 28k

@alun

Last seen 7 hours ago

The city by the bay

Make sure you're using the latest version of edgeR and Bioconductor. readDGE exists for me with edgeR version 3.16.3, in BioC 3.4 running on R 3.3.1.

ADD COMMENT • link 8.1 years ago Aaron Lun ★ 28k

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Seems edgeR package was not installed.

ADD REPLY • link 8.1 years ago biotech ▴ 160

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readDGE() exists in every version of edgeR.

ADD REPLY • link 8.1 years ago Gordon Smyth 52k