MLSeq package error
1
@jonessara770-11760
Last seen 6.7 years ago
Hello,
I would like to use MLSeq package but I am getting this error.
> library(MLSeq)
Error : object ‘bag.default’ is not exported by 'namespace:caret'
Error: package or namespace load failed for ‘MLSeq’
would you please help me to overcome this error?
Thanks
Sara
software error
• 963 views
@jonessara770-11760
Last seen 6.7 years ago
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.12.1 (Sierra)
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_3.14.0 randomForest_4.6-12 limma_3.28.21 DESeq2_1.12.4 SummarizedExperiment_1.2.3 Biobase_2.32.0 GenomicRanges_1.24.3
[8] GenomeInfoDb_1.8.7 IRanges_2.6.1 S4Vectors_0.10.3 BiocGenerics_0.18.0 caret_6.0-72 ggplot2_2.1.0 lattice_0.20-34
loaded via a namespace (and not attached):
[1] Rcpp_0.12.7 locfit_1.5-9.1 digest_0.6.10 foreach_1.4.3 plyr_1.8.4 chron_2.3-47 acepack_1.4.1 MatrixModels_0.4-1 RSQLite_1.0.0
[10] zlibbioc_1.18.0 minqa_1.2.4 data.table_1.9.6 annotate_1.50.1 SparseM_1.72 car_2.1-3 nloptr_1.0.4 rpart_4.1-10 Matrix_1.2-7.1
[19] splines_3.3.1 lme4_1.1-12 BiocParallel_1.6.6 geneplotter_1.50.0 stringr_1.1.0 foreign_0.8-67 RCurl_1.95-4.8 munsell_0.4.3 mgcv_1.8-15
[28] htmltools_0.3.5 nnet_7.3-12 gridExtra_2.2.1 htmlTable_1.7 Hmisc_4.0-0 codetools_0.2-15 XML_3.98-1.4 MASS_7.3-45 bitops_1.0-6
[37] ModelMetrics_1.1.0 grid_3.3.1 nlme_3.1-128 xtable_1.8-2 gtable_0.2.0 DBI_0.5-1 magrittr_1.5 scales_0.4.0 stringi_1.1.2
[46] XVector_0.12.1 reshape2_1.4.2 genefilter_1.54.2 latticeExtra_0.6-28 Formula_1.2-1 RColorBrewer_1.1-2 iterators_1.0.8 tools_3.3.1 pbkrtest_0.4-6
[55] survival_2.40-1 AnnotationDbi_1.34.4 colorspace_1.2-7 cluster_2.0.5 knitr_1.14 quantreg_5.29
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You need to show the output from sessionInfo().
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.12.1 (Sierra)
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_3.14.0 randomForest_4.6-12 limma_3.28.21 DESeq2_1.12.4 SummarizedExperiment_1.2.3 Biobase_2.32.0 GenomicRanges_1.24.3
[8] GenomeInfoDb_1.8.7 IRanges_2.6.1 S4Vectors_0.10.3 BiocGenerics_0.18.0 caret_6.0-72 ggplot2_2.1.0 lattice_0.20-34
loaded via a namespace (and not attached):
[1] Rcpp_0.12.7 locfit_1.5-9.1 digest_0.6.10 foreach_1.4.3 plyr_1.8.4 chron_2.3-47 acepack_1.4.1 MatrixModels_0.4-1 RSQLite_1.0.0
[10] zlibbioc_1.18.0 minqa_1.2.4 data.table_1.9.6 annotate_1.50.1 SparseM_1.72 car_2.1-3 nloptr_1.0.4 rpart_4.1-10 Matrix_1.2-7.1
[19] splines_3.3.1 lme4_1.1-12 BiocParallel_1.6.6 geneplotter_1.50.0 stringr_1.1.0 foreign_0.8-67 RCurl_1.95-4.8 munsell_0.4.3 mgcv_1.8-15
[28] htmltools_0.3.5 nnet_7.3-12 gridExtra_2.2.1 htmlTable_1.7 Hmisc_4.0-0 codetools_0.2-15 XML_3.98-1.4 MASS_7.3-45 bitops_1.0-6
[37] ModelMetrics_1.1.0 grid_3.3.1 nlme_3.1-128 xtable_1.8-2 gtable_0.2.0 DBI_0.5-1 magrittr_1.5 scales_0.4.0 stringi_1.1.2
[46] XVector_0.12.1 reshape2_1.4.2 genefilter_1.54.2 latticeExtra_0.6-28 Formula_1.2-1 RColorBrewer_1.1-2 iterators_1.0.8 tools_3.3.1 pbkrtest_0.4-6
[55] survival_2.40-1 AnnotationDbi_1.34.4 colorspace_1.2-7 cluster_2.0.5 knitr_1.14 quantreg_5.29