Hello, The following code only give me the p.value of significant genes: sam.out = sam ( e, cl ) samList = summary(sam.out, 1.0) samList $mat.sig$p.value Would anyone kindly tell me how to get whole list of p.value from siggenes sam.out result? Thanks a lot! Yanqin --------------------------------- [[alternative HTML version deleted]]

Hi Yanqin, you get the p.values of the all the genes by sam.out@p.value and the p.values of the significant genes by samList$mat.sig[,"p.value"] But please note that these are raw p-values, i.e. p-values that are not adjusted for multiplicity. Best, Holger > --- Urspr?ngliche Nachricht --- > Von: Yanqin Yang <yanqin_yang@yahoo.com> > An: bioconductor@stat.math.ethz.ch > Betreff: [BioC] How to get p.value from siggenes result? > Datum: Thu, 12 May 2005 09:51:26 -0700 (PDT) > > Hello, > > The following code only give me the p.value of significant genes: > sam.out = sam ( e, cl ) > samList = summary(sam.out, 1.0) > samList $mat.sig$p.value > Would anyone kindly tell me how to get whole list of p.value from siggenes > sam.out result? > > Thanks a lot! > > Yanqin > > > > --------------------------------- > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > -- +++ Neu: Echte DSL-Flatrates von GMX - Surfen ohne Limits +++ Always online ab 4,99 Euro/Monat: http://www.gmx.net/de/go/dsl