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I want to annotate the SNP6 data from tcga with its chromosomal coordinates and allele information using bioconductor packages.
Composite Element REF Call Confidence
SNP_A-2131660 2 0.0048
SNP_A-1967418 2 0.1260
SNP_A-1969580 2 0.0047
SNP_A-4263484 1 0.0002
SNP_A-1978185 0 0.0027
SNP_A-4264431 0 0.0017
SNP_A-1980898 2 0.0148