Hi
I have got the result like this
> count.DEnumber(res1,p.cut=c(0.001,0.005),q.cut=c(0.01,0.05))
$pval.table
data1 data2 data3 data4 data5 data6 Fisher maxP
p=0.001 12 4 698 180 1118 3 785 74
p=0.005 70 16 1430 572 1863 33 1587 226
$FDR.table
data1 data2 data3 data4 data5 data6 Fisher maxP
FDR=0.01 0 0 505 1 1170 0 643 3
FDR=0.05 0 0 1836 129 2515 0 2144 16
I got the gene count no . Now i want to visualize the genes according to their p value and FDR values.
how will i save the result including the genes with their cut off in tab format ?