differences in formatting of the citation on the bioconductor link and from within R console
2
0
Entering edit mode
@bhaktidwivedi-8895
Last seen 4.2 years ago
United States

Hi,

Any suggestions on how I can change the formatting (particularly the order of the authors listed) of the citation listed under the bioconductor package link, for e.g., https://www.bioconductor.org/packages/release/bioc/html/packageName.html

When I call 'citation' for the package from within the R console, it's perfectly fine; however when I view the citation on the bioconductor link for the package, the order of the authors is reversed. How can I correct it?

Incorrect: 'last author last name' 'first author initials' & 'last author first initial' (2015). package details....

Correct: 'First author first and last name' & 'last author first and  last name' (2015). package details....

Thank you.

 

 

 

 

 

 

citation • 1.0k views
ADD COMMENT
0
Entering edit mode
@martin-morgan-1513
Last seen 5 days ago
United States

Ask questions about package development on the bioc-devel mailing list. There is an existing recent thread. No need to be secretive about your package; I guess it's SISPA.

The web page is formatted by the command

> format(citation("SISPA"), type="html")
[1] "Kowalski BD&J (2015). _SISPA: SISPA: Method for Sample Integrated Set\nProfile Analysis_. R package version 1.3.2."

In the Author: field of your DESCRIPTION file you have an ampersand between authors. Replace it with a comma

Index: DESCRIPTION
===================================================================
--- DESCRIPTION    (revision 121179)
+++ DESCRIPTION    (working copy)
@@ -1,9 +1,9 @@
 Package: SISPA
 Type: Package
 Title: SISPA: Method for Sample Integrated Set Profile Analysis
-Version: 1.3.2
+Version: 1.3.3
 Date: 2015-10-22
-Author: Bhakti Dwivedi & Jeanne Kowalski
+Author: Bhakti Dwivedi, Jeanne Kowalski
 Maintainer: Bhakti Dwivedi <bhakti.dwivedi@emory.edu>
 Description: Sample Integrated Gene Set Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.
 Depends:R (>= 3.2),GSVA,changepoint,data.table,ggplot2,plyr

or use the Authors@R formulation (and remove the existing Author and Maintainer: fields) for better control; see "Writing R Extensions" for additional detail.

 

 

ADD COMMENT
0
Entering edit mode
@bhaktidwivedi-8895
Last seen 4.2 years ago
United States

Thank you. Appreciate your response and answer!

ADD COMMENT

Login before adding your answer.

Traffic: 1627 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6