Entering edit mode
Dear all,
any suggestions regarding a good algorithm to use to call CNV (copy number variants) in the cancer genomes ? many thanks !
-- bogdan
0
Entering edit mode
We have been using whole-genome sequencing ;)
0
Entering edit mode
FYI: you should rather post this as a comment as opposed to an answer.
Another question is whether or not you have matched normal samples?
In any event, there are a large number of tools listed on this seqanswers page that you can thumb through.
0
Entering edit mode
Thank you Steve. Yes, we have normal-tumor pairs. I looked on the page you sent me the link to, and of course, also in the literature, there are many algorithms. I was just looking for an algorithm that most of the community trusts and the results have been verified. Thank you ;;)
Similar Posts
Loading Similar Posts
Traffic: 885 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6
Using what technology? exome-seq? (still an "open" problem, AFIAK) whole genome sequencing? arrays?