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rasii
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@rasii-10044
Last seen 8.2 years ago
Hi,
I'm trying to analyse my Illumina methylation EPIC microarray data using RnBeads and I get the following error when i do:
rnb.run.analysis(dir.reports=reportDir, sample.sheet=sampleSheet, data.dir=idatDir, data.type="infinium.idat.dir")
2016-08-28 09:37:17 0.5 STATUS STARTED RnBeads Pipeline 2016-08-28 09:37:17 0.5 INFO Initialized report index and saved to index.html 2016-08-28 09:37:17 0.5 STATUS STARTED Loading Data 2016-08-28 09:37:17 0.5 INFO Number of cores: 1 2016-08-28 09:37:18 0.5 INFO Loading data of type "infinium.idat.dir" 2016-08-28 09:37:18 0.5 STATUS STARTED Loading Data from IDAT Files 2016-08-28 09:37:18 0.5 ERROR Some IDAT files are not present in the supplied base directory, for instance 200357150012_Red.idat, 200357150012_Grn.idat, 200357150012_Red.idat, 200357150012_Grn.idat, 200357150012_Red.idat, 200357150012_Grn.idat Error in logger.error(txt) : Some IDAT files are not present in the supplied base directory, for instance 200357150012_Red.idat, 200357150012_Grn.idat, 200357150012_Red.idat, 200357150012_Grn.idat, 200357150012_Red.idat, 200357150012_Grn.idat
I have rechecked my folder that holds the .idat files and I have all the necessary files in there so I'm not sure why its giving me this error.
Any help is highly appreciated.
Thanks,
Rasi