There is an interesting paper by Churchill (probably at his website at jax.org). At 10:44 AM 4/22/2005, Robert Gentleman wrote: >Hmm, google will do most of that work for you, Wolfgang Huber has done >a lot of work on this (see the package vsn, which contains code for >carrying out such an analysis). > >On Apr 22, 2005, at 5:12 AM, E Motakis, Mathematics wrote: > >>Dear all, >> >>Recently, I have been working on variance stabilization techniques for >>cDNA microarrays. I have been studying the papers: >> >>I. Rocke and Durbin, (2001), `A model for measurement error for gene >>expression arrays', J. Comput. Biol, 8, 557--569 and >> >>II. Durbin, Hardin, Hawkins, and Rocke, (2002), `A >>variance-stabilizing transformation for gene-expression microarray >>data', Bioinformatics, 18, S105-S110. >> >>Their variance stabilization seems to work well for most of the genes >>I replicate (and for my data). I wonder if someone is aware of other >>related papers to that subject (not only by those authors). Is there >>any other technique for variance stabilization available in the >>microarrays literature? >> >>Thank you in advance. >> >>Makis Motakis >> >>---------------------- >>E Motakis, Mathematics >>E.Motakis@bristol.ac.uk >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor@stat.math.ethz.ch >>https://stat.ethz.ch/mailman/listinfo/bioconductor >> >+-------------------------------------------------------------------- --- >----------------+ >| Robert Gentleman phone: (206) 667-7700 > | >| Head, Program in Computational Biology fax: (206) 667-1319 | >| Division of Public Health Sciences office: M2-B865 > | >| Fred Hutchinson Cancer Research Center > | >| email: rgentlem@fhcrc.org > | >+-------------------------------------------------------------------- --- >----------------+ > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Bioinformatics Consulting Center Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111