Question

DESeq2 for R 3.1.3 version

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minie • 0

@minie-11306

Last seen 7.1 years ago

Hello,

i am trying to install DESeq2 for R 3.1.3, but it is throwing an error : package ‘DESeq2’ is not available (for R version 3.1.3)

I know R is updated tp 3.3 and above , is there any way via which can install the libraries on R 3.1.3 version?

Any help shall be much appreciated

Thanks

R bioconductor deseq2 • 1.9k views

ADD COMMENT • link updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.3 years ago by minie • 0

score 0 · Answer 1 · 2016-08-17

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Steve Lianoglou ★ 13k

@steve-lianoglou-2771

Last seen 22 months ago

United States

How are you trying to install the package ... hopefully not via install.packages()?

If so, please follow the installation instructions on the DESeq2 landing page and run the following commands in R:

source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")

ADD COMMENT • link 8.3 years ago Steve Lianoglou ★ 13k

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Hi Steve,

I tried that method but didn’t work , so its mentioned in the installation page of Bioconductor regarding different versions of installation. Kindly refer this page for 3.1 version of Rhttp://bioconductor.org/install/#install-bioconductor-packages

ADD REPLY • link 8.3 years ago minie • 0

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If you can provide all of your code and the sessionInfo(), we might be able to figure out a solution.

ADD REPLY • link 8.3 years ago Michael Love 43k