Question

How to use GRanges to find locations that do NOT overlap?

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sarah.blackstone7734 • 0

@sarahblackstone7734-11208

Last seen 8.3 years ago

I have two GRanges objects, G1 and G2.

I would like to subtract the ranges in G2 from G1.

findOverlaps(G1,G2) will give me the overlaps, but I want to do the opposite of this. Is it possible?

granges • 797 views

ADD COMMENT • link updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by sarah.blackstone7734 • 0

score 0 · Answer 1 · 2016-08-10

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Michael Lawrence ★ 11k

@michael-lawrence-3846

Last seen 3.0 years ago

United States

G1[G1 %outside% G2]

Also in devel:

subsetByOverlaps(G1, G2, invert=TRUE)

ADD COMMENT • link 8.3 years ago Michael Lawrence ★ 11k