Error in updating metadata to local database in AnnotationHub
1
0
Entering edit mode
@janettehstong-11251
Last seen 8.1 years ago

> library(AnnotationHub)
> ah = AnnotationHub()
updating metadata: retrieving 1 resource
Error: database is corrupt; remove it and try again
  database: ‘//ad.monash.edu/home/User065/janettet/Documents/AppData/.AnnotationHub/annotationhub.sqlite3’
  reason: missing tables
In addition: Warning message:
download failed
  hub path: ‘https://annotationhub.bioconductor.org/metadata/annotationhub.sqlite3’
  cache path: ‘//ad.monash.edu/home/User065/janettet/Documents/AppData/.AnnotationHub/annotationhub.sqlite3’
  reason: Problem with the SSL CA cert (path? access rights?)

bioconductor • 965 views
ADD COMMENT
0
Entering edit mode
@valerie-obenchain-4275
Last seen 2.7 years ago
United States

Remove the .AnnotationHub/ directory (location shown in Error above). Start a fresh R session and try again.

Valerie

ADD COMMENT

Login before adding your answer.

Traffic: 592 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6