I was wondering is it possible to visualize tree structure, in particular the branch nodes are shown.
The example is from wikipedia (https://en.wikipedia.org/wiki/Newick_format) and tree in the newick format is: (A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F;
I can visualize tree by ggtree, but I did not know which parameters can highlight the branch nodes.
v <- '(A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F;'
ggtree(read.tree(text=v)) + geom_tiplab()
My motivation of using ggtree is to visualize lineage tree, e.g. C.elegans, thus I care more about branching nodes (e.g. E and F in the example) and their child nodes.
@YGC
Thanks,
Yun
Amazing ;-)