Error when installing ReportingTools
2
@asma-rabe-4697
Last seen 6.9 years ago
Japan
Hi,
I got this error while installing ReportingTools:
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot download all files
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/GSEABase_1.35.0.tar.gz': status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package 'GSEABase' failed
trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/DESeq2_1.13.8.tar.gz'
Content type 'application/x-gzip' length 1418916 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
==========
Any help is appreciated
reportingtools
• 1.3k views
@martin-morgan-1513
Last seen 5 months ago
United States
I don't really understand why this error occurs, but the version of GSEABase available for Bioc 3.4 is 1.35.2, as seen from the package landing page for version 3.4 . Does the error persist if you install packages from a new R session? Can you please edit your session to include the output of sessionInfo()
?
@asma-rabe-4697
Last seen 6.9 years ago
Japan
Hi Martin,
Thank you very much.
The error was due to that installing RcppArmadillo package requires gcc version > gcc4.6.
It works when i installed gcc4.8.
Again. Thank you!
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The version of gcc would not influence the ability of R to download a file, so that is not the problem. Glad that this is working for you now.