Analyzing a continuous phenotype using DESeq2
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pjgalli2 • 0
@pjgalli2-11068
Last seen 8.5 years ago

Hello.  Is it possible to analyze a continuous phenotype with DESeq2, without grouping into factors?  I receive this note when I run the default DESeq function:

-- note: fitType='parametric', but the dispersion trend was not well captured by the
   function: y = a/x + b, and a local regression fit was automatically substituted.
   specify fitType='local' or 'mean' to avoid this message next time.

 

DESeq2 continuous • 1.2k views
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Nevermind.  I had the phenotype coded as factors instead of numeric.  Looks like it's working.

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