metagenomeSeq for continuous phenotype
2
1
Entering edit mode
pjgalli2 • 0
@pjgalli2-11068
Last seen 8.5 years ago

Hello.  I am trying to run the fitFeatureModel function in metagenomeSeq for a continuous phenotype, but I receive this error:

Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : 
  var is empty

Is there a way to use metagenomeSeq for a continuous phenotype?  Thank you.

metagenomeseq continuous limma • 1.6k views
ADD COMMENT
0
Entering edit mode
@joseph-nathaniel-paulson-6442
Last seen 7.8 years ago
United States
Hi, Thanks - I'll write an update to fix this. Can you please post on the github tracker? Thanks! On 2016-07-11 09:34, pjgalli2 [bioc] wrote: > Activity on a post you are following on support.bioconductor.org [1] > > User pjgalli2 [2] wrote Question: metagenomeSeq for continuous phenotype [3]: > > Hello. I am trying to run the fitFeatureModel function in metagenomeSeq for a continuous phenotype, but I receive this error: > > Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : > var is empty > > Is there a way to use metagenomeSeq for a continuous phenotype? Thank you. > ------------------------- > > Post tags: metagenomeseq, continuous, limma > > You may reply via email or visit metagenomeSeq for continuous phenotype Links: ------ [1] https://support.bioconductor.org [2] pjgalli2 [3] metagenomeSeq for continuous phenotype
ADD COMMENT
0
Entering edit mode
pjgalli2 • 0
@pjgalli2-11068
Last seen 8.5 years ago

Just posted it here:

https://github.com/HCBravoLab/metagenomeSeq/issues/36

ADD COMMENT

Login before adding your answer.

Traffic: 443 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6