ChAMP package library loading error
0
0
Entering edit mode
sdeshpande • 0
@sdeshpande-11083
Last seen 8.4 years ago

Hello,

I am very inexperienced with R.

I am trying to download ChAMP package for methylation analysis.

The way I did this was by going to Bioconductor ChAMP url and opening R script.

I copied the scripts onto R studio. Most of the package downloaded.

I got one warning message

package ‘BiocInstaller’ was built under R version 3.2.0 

I had R 3.1.0 version. Initially I ignored this message and went to the next command

library(ChAMP)

which again I copied and pasted on my console. I got error message

Error in library(ChAMP) : there is no package called ‘ChAMP’

I thought this may be due to older R version. So I downloaded the latest version R3.3.1

and tried the library command again. I got the same error message.

Thanks in advance for the help

Shayu

 

methylation package • 1.6k views
ADD COMMENT
0
Entering edit mode

Looking at the R script, the call to biocLite loads the dependency packages.  Did you also run biocLite("ChAMP")  to install the ChAMP  package?  

You might also consider running biocLite()  to make sure your packages are up-to-date.  

 

ADD REPLY

Login before adding your answer.

Traffic: 831 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6