Entering edit mode
I'm interested in analyze some RNA-Seq data from Encode. They have posted a gene quantification file for each sample from RSEM
. My understanding is that I can pass the expected counts to voom
and then limma
even though raw counts is more ideal. I just wanted to check that this is correct?
Thanks
Is the RSEM quantification by gene or by transcript?
They have both. I was interested in the gene quantification.