Question

workflow.R in BioC 3.3

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yasmin.friedmann • 0

@yasminfriedmann-10780

Last seen 8.5 years ago

Hi,

I would like to install the rnaseqgene workflow. But the command

> source("http://bioconductor.org/workflows.R")

gives me the following error

Bioconductor version 3.3 (BiocInstaller 1.22.2), ?biocLite for help

Error: BiocInstaller:::BIOC_VERSION == "3.2" is not TRUE

which, as I understand from previous questions, is due to the hard coding of the bioc version...is there any way to circumvent this?

Many thanks!

Yasmin

workflows rnaseqgene • 2.0k views

ADD COMMENT • link updated 8.4 years ago by j.baldauf • 0 • written 8.5 years ago by yasmin.friedmann • 0

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It may be that the workflow machine needs to be updated to R and Bioconductor 3.3. I'll wait for someone from the Bioc core team to weigh in though.

ADD REPLY • link 8.5 years ago Michael Love 42k

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This is correct. This will happen soon.

ADD REPLY • link 8.5 years ago Dan Tenenbaum ★ 8.2k

score 0 · Answer 1 · 2016-06-02

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j.baldauf • 0

@jbaldauf-10821

Last seen 6.7 years ago

I just observed the same error message. Do you already know when this problem will be fixed?

ADD COMMENT • link 8.4 years ago j.baldauf • 0

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The workflow builders have been updated to R-3.3 and Bioconductor-3.3. However some workflows are not building. We're working with the authors to make that happen. Then they will be available without the error message.

ADD REPLY • link 8.4 years ago Dan Tenenbaum ★ 8.2k