dexseq_prepare_annotation gives an empty gff file
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@sakuranussbaum-10160
Last seen 8.6 years ago

Hello,

I am trying to follow this pipeline and I have problems preparing the gtf file.

I enter the following command:

 

python /Library/Frameworks/R.framework/Versions/3.2/Resources/library/DEXSeq/python_scripts/dexseq_prepare_annotation.py mm10.genes.gtf mm10.genes.gff


But it keeps giving me an empty gff file (no error message).

Does anyone know what can be the problem?

Thanks in advance,
Sakura

 

dexseq prepare annotation empty gff • 905 views
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