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sakura.nussbaum
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10
@sakuranussbaum-10160
Last seen 8.6 years ago
Hello,
I am trying to follow this pipeline and I have problems preparing the gtf file.
I enter the following command:
python /Library/Frameworks/R.framework/Versions/3.2/Resources/library/DEXSeq/python_scripts/dexseq_prepare_annotation.py mm10.genes.gtf mm10.genes.gff
But it keeps giving me an empty gff file (no error message).
Does anyone know what can be the problem?
Thanks in advance,
Sakura