Question

Prevent biocLite() from asking to update packages every time it's used

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jacorvar ▴ 40

@jacorvar-8972

Last seen 13 months ago

European Union

Dear BioC,

Every time I install a package with the biocLite() function, once the package has been installed, it asks me if I want to update all, some or none of the packages already installed.

I would appreciate if someone tells me a way to prevent that function from asking it every time I use it.

Thanks a lot

bioclite package installation package updates • 1.4k views

ADD COMMENT • link updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by jacorvar ▴ 40

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Any reason why you don't accept the updates? It is highly recommended that you accept them (by choosing the "all" option). That way you'll kill 2 birds with the same stone: biocLite() won't ask you again and you will keep your installation up to date.

H.

ADD REPLY • link 8.6 years ago Hervé Pagès 16k

score 0 · Answer 1 · 2016-04-28

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Martin Morgan 25k

@martin-morgan-1513

Last seen 4 months ago

United States

After library(BiocInstaller), see ?biocLite and suppressUpdates.

ADD COMMENT • link 8.6 years ago Martin Morgan 25k

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Thanks Martin! It worked!

ADD REPLY • link 8.4 years ago jacorvar ▴ 40