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13117882295
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@13117882295-10179
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> source("http://bioconductor.org/biocLite.R")
> biocLite("ArrayExpress")
> library("ArrayExpress")
> getwd()
> setwd("D:/test")
> AEset<-ArrayExpress("E-GEOD-470")
> save(AEset, file="AEset.RData")
>load("AEset.rdata")
> class(AEset)
> AEset
> pData(AEset)
> colnames(pData(AEset))
>fac<colnames(pData(AEset))[grep("Factor",colnames(pData(AEset)))] ;
>fac
[1] "Factor.Value..DiseaseState." "Factor.Value..EnvironmentalStress." "Factor.Value..Time."
> library(arrayQualityMetrics)
> arrayQualityMetrics(expressionset=AEset, outdir="QAraw",force=FALSE, do.logtransform=TRUE, intgroup=fac)
The report will be written into directory 'QAraw'.
Error in match(x, table, nomatch = 0L) :
argument "intgroup" is missing, with no default
Idon’t know what’s the problem in my steps? And how can i fix it?