> biocLite("TCGAbiolinks")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.4 (2016-03-10).
Installing package(s) ‘TCGAbiolinks’
trying URL 'https://bioconductor.org/packages/3.2/bioc/bin/macosx/mavericks/contrib/3.2/TCGAbiolinks_1.0.10.tgz'
Content type 'application/x-gzip' length 15361039 bytes (14.6 MB)
==================================================
downloaded 14.6 MB
The downloaded binary packages are in
/var/folders/84/rgbbpd9s5nq6f1q664tdmyrm0000gn/T//RtmpCrhV1l/downloaded_packages
> library("TCGAbiolinks")
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘R.oo’
Error: package or namespace load failed for ‘TCGAbiolinks’
> sessionInfo()
R version 3.2.4 (2016-03-10)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.4 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] tools stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.20.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.4 futile.logger_1.4.1 GenomeInfoDb_1.6.3
[4] plyr_1.8.3 XVector_0.10.0 R.methodsS3_1.7.1
[7] GenomicFeatures_1.22.13 bitops_1.0-6 futile.options_1.0.0
[10] zlibbioc_1.16.0 biomaRt_2.26.1 annotate_1.48.0
[13] RSQLite_1.0.0 gtable_0.2.0 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[16] DBI_0.3.1 parallel_3.2.4 cluster_2.0.3
[19] rtracklayer_1.30.4 genefilter_1.52.1 Biostrings_2.38.4
[22] S4Vectors_0.8.11 IRanges_2.4.8 stats4_3.2.4
[25] grid_3.2.4 Biobase_2.30.0 AnnotationDbi_1.32.3
[28] survival_2.38-3 XML_3.98-1.4 BiocParallel_1.4.3
[31] ggplot2_2.1.0 lambda.r_1.1.7 ConsensusClusterPlus_1.24.0
[34] splines_3.2.4 Rsamtools_1.22.0 scales_0.4.0
[37] CNTools_1.26.0 BiocGenerics_0.16.1 GenomicRanges_1.22.4
[40] GenomicAlignments_1.6.3 SummarizedExperiment_1.0.2 colorspace_1.2-6
