I am trying to run a function from GenomicRanges package called makeGRangesFromDataFrame but it is not working. I am aware that I am using a functional code because it is not the first time that I am running it.

Thus, I assumed that the problem was the lack of compatibility between packages. I tested it with:

source("https://bioconductor.org/biocLite.R")

biocValid()

Then, as 160 packages appeared as out of date I tried to upgrade:

biocLite("BiocUpgrade") 

However, I am getting this error:

Bioconductor version 3.2 cannot be upgraded with R version 3.2.4

Some idea to get my biocValid() as TRUE here (meaning everything up to date)?