Hi all,

 I want to read the BAM file in R studio for Package RapdiR using this command.

> mask <- "mask.bed"

> makeBinnedCountsFile(bam.file.list = c("file1.bam", "file2.bam"),
+ sampleIDs = c("sample1", "sample2"),
+ binned.counts.fname = output.fname,
+ k = 20000)

so please tell me what should be the input file for this command

A Google search indicates that RapidR is not a Bioconductor package, so this forum is not the right place to ask. Perhaps you would be better off contacting the package authors directly.