TCGAbiolinks data download error

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maedakus ▴ 10

@maedakus-9484

Last seen 8.2 years ago

Hi all,

i am very new to bioconductor, and now i am planning to use TCGAbiolinks to download data from TCGA,

in such case, the error message comes out .

if you know the solution, would you mind telling me ?

Thanks in advance.

TCGAdownload(query, path = "C:/Users/....../NCBI GEO/TCGA database")

curl::curl_download(input, tt, mode = "wb", quiet = !showProgress) error: Timeout was reached

tcgabiolinks • 2.3k views

ADD COMMENT • link 8.7 years ago maedakus ▴ 10

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Hi,

Please, could you send the complete code and the version of the package.

TCGA ftp might have been down for a while, or there might be a bug in the download functions

ADD REPLY • link 8.7 years ago Tiago Chedraoui Silva ▴ 260

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thank you for answer, later on this issues was solved as you suggested.

now i am analysing data in office in company ,so the security system blocked FTP accesss.

now i solved this problem , thank you

ADD REPLY • link 8.7 years ago maedakus ▴ 10

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Hello, I have the same problem, but I don't understand the answer suggested by tiagochst. Could you give me a more extended explanation?

ADD REPLY • link 8.6 years ago Fernando • 0

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