Hi everyone

I want to know for cluster analysis of illumina microarray gene expression data (in idat format) which all the algorithms are used and which software are available ?

What i know is BHC from bioconductor can be used but i am not sure

any help?

Thanks!!!!!!!!!!!

Following on from your previous post "how to use idat file for analyses in bioconductor", have you tried

x <- read.idat(idatfiles, bgxfile)
y <- neqc(x)
plotMDS(y)

?