Dear all!
Greetings!
For whole entire day, I was trying to download GEOquery package in R & Bioconductor (ubuntu) but unfortunately Icouldn't. Everytime, there are different error messages. You can see the highlighted commands that I used and part of error messages. So, Could anyone help me to fix this annoying problems? I'll highly appreciate you if you can fix this problem.
Regards
F.R.
> biocLite("GEOquery")
0.tar.gz'
Content type 'application/x-gzip' length 13630252 bytes (13.0 Mb)
opened URL
==================================================
downloaded 13.0 Mb
* installing *source* package ‘RCurl’ ...
checking for curl-config... no
Cannot find curl-config
ERROR: configuration failed for package ‘RCurl’
* removing ‘/home/fariba/R/x86_64-pc-linux-gnu-library/3.0/RCurl’
ERROR: dependencies ‘XML’, ‘RCurl’ are not available for package ‘GEOquery’
* removing ‘/home/fariba/R/x86_64-pc-linux-gnu-library/3.0/GEOquery’
The downloaded source packages are in
‘/tmp/RtmpN02eVM/downloaded_packages’
Warning: unable to access index for repository http://cran.utstat.utoronto.ca/src/contrib
Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘RCurl’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘GEOquery’ had non-zero exit status
>
> library(GEOquery)
Error in library(GEOquery) : there is no package called ‘GEOquery’
