In new version of bioconductor, I have used GenomicRanges packages, but intervaltree is defunct. I believed that intervaltree algorithm is used for finding overlapped regions from different genomic interval. What is the main different between intervaltree and nclist algorithm for finding overlapped regions in R ? I am bit of confused. I would be grateful if someone gives me comprehend explanation for it ? FYI, finding overlapped regions in parallel, using intervaltree is only way to solve the problem ? Thanks a lot the benefit of this community.
Thanks a lot