manage github dependency , not CRAN nor bioc

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kmezhoud ▴ 10

@kmezhoud-6841

Last seen 5.7 years ago

Tunisia

Dear bioC,

How can I use a github (not CRAN) dependency in bioconductor package?

I added in DESCRIPTION

Remotes:
    github::vnijs/MathJaxR (>= 0.11)

but does not work.

Karim

Thanks

dependency github • 2.1k views

ADD COMMENT • link 8.9 years ago kmezhoud ▴ 10

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Dan Tenenbaum ★ 8.2k

@dan-tenenbaum-4256

Last seen 6 months ago

United States

Questions about developing bioconductor packages should be posted to the bioc-devel list.

But the answer is, you can't. All dependencies must be available in CRAN or Bioconductor.

I have not seen the Remotes field in a DESCRIPTION file before and it is not discussed in Writing R Extensions, therefore I assume it is not supported.

ADD COMMENT • link 8.9 years ago Dan Tenenbaum ★ 8.2k

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BTW, it looks like the Remotes field is a devtools thing. But biocLite() and install.packages() do not know about it.

No need to post to bioc-devel unless you have further questions about this.

ADD REPLY • link 8.9 years ago Dan Tenenbaum ★ 8.2k

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kmezhoud ▴ 10

@kmezhoud-6841

Last seen 5.7 years ago

Tunisia

Thanks,

Ok for bioc-devel list.

Just for to close.

https://cran.r-project.org/web/packages/devtools/vignettes/dependencies.html

Thanks

ADD COMMENT • link 8.9 years ago kmezhoud ▴ 10

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