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Hi,
I am trying to install goseq package in my R studio 3.2.2 doing the following:
source("https://bioconductor.org/biocLite.R")
biocLite("goseq")
library(goseq)
After that, I can't use the package because of a problem with geneLenDataBase. I keep receiving the following messages:
Warning messages: 1: running command '"C:/R/R-32~1.2/bin/i386/R" CMD INSTALL -l "C:\R\R-3.2.2\library" C:\Users\Cristina\AppData\Local\Temp\RtmpsfFYq5/downloaded_packages/geneLenDataBase_1.6.0.tar.gz' had status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘geneLenDataBase’ had non-zero exit status 3: running command '"C:/R/R-32~1.2/bin/i386/R" CMD INSTALL -l "C:\R\R-3.2.2\library" C:\Users\Cristina\AppData\Local\Temp\RtmpsfFYq5/downloaded_packages/GO.db_3.2.2.tar.gz' had status 1 4: In install.packages(update[instlib == l, "Package"], l, repos = repos, : installation of package ‘GO.db’ had non-zero exit status
And I also can't install the package separatedly with: biocLite("geneLenDataBase").It tells me it is not available for my R version, I have tried to do the same with an older R version but it happens the same.
Can anybody help me? thank you very much
Hi,
It looks like something went wrong during the installation.
Could you repeat the installation by staring RStudio as an administrator? I just did this with a clean R installation on windows and had no problems.
It is not a good idea to run any program as 'administrator', and it is not necessary to do so to use R and Bioconductor.
It looks like GO.db did not install correctly; try again just installing that package,
biocLite("GO.db"). Edit your question to include the complete output ofbiocLite("GO.db")and post a comment letting us know you've updated the question.I don't know what I did but I fixed it! I started to have more problems so I reinstalled everything and now it seems to work. My problem now is how to do the analysis, I have published other post asking about it because I am lost, thank you very much