Hi,
I'm getting an error when trying to load openCyto. It was working fine before but now I'm getting the following error message:
> library(openCyto);
Error : objects ‘dfltCounts’, ‘drvkde’ are not exported by 'namespace:ks'
Error: package or namespace load failed for ‘openCyto’
I tried an update using biocLite but I still get the same message:
> biocLite('openCyto')
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.0), R
3.2.2 (2015-08-14).
Installing package(s) ‘openCyto’
trying URL 'https://bioconductor.org/packages/3.2/bioc/bin/macosx/mavericks/contrib/3.2/openCyto_1.8.0.tgz'
Content type 'application/x-gzip' length 1242716 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
The downloaded binary packages are in
/var/folders/k2/wvj3nfcn021_lyfx04sqyxcm0000gn/T//RtmpR3CxcF/downloaded_packages
> library('openCyto');
Error : objects ‘dfltCounts’, ‘drvkde’ are not exported by 'namespace:ks'
Error: package or namespace load failed for ‘openCyto’
My R session info:
> sessionInfo();
R version 3.2.2 (2015-08-14)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.5 (Yosemite)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils
[5] datasets methods base
other attached packages:
[1] flowWorkspace_3.16.0
[2] gridExtra_2.0.0
[3] ncdfFlow_2.16.0
[4] BH_1.58.0-1
[5] RcppArmadillo_0.6.100.0.0
[6] flowViz_1.34.0
[7] lattice_0.20-33
[8] flowCore_1.36.0
[9] BiocInstaller_1.20.0
loaded via a namespace (and not attached):
[1] multicool_0.1-8 ks_1.10.0
[3] pcaPP_1.9-60 stats4_3.2.2
[5] chron_2.3-47 MCMCpack_1.3-3
[7] XML_3.98-1.3 RBGL_1.46.0
[9] R.oo_1.19.0 hexbin_1.27.1
[11] DBI_0.3.1 R.utils_2.1.0
[13] Rgraphviz_2.14.0 BiocGenerics_0.16.0
[15] RColorBrewer_1.1-2 robustbase_0.92-5
[17] stringr_1.0.0 zlibbioc_1.16.0
[19] gtable_0.1.2 R.methodsS3_1.7.0
[21] mvtnorm_1.0-3 coda_0.18-1
[23] misc3d_0.8-4 latticeExtra_0.6-26
[25] Biobase_2.30.0 knitr_1.11
[27] flowClust_3.8.0 parallel_3.2.2
[29] DEoptimR_1.0-4 Rcpp_0.12.1
[31] KernSmooth_2.23-15 corpcor_1.6.8
[33] graph_1.48.0 IDPmisc_1.1.17
[35] stringi_1.0-1 dplyr_0.4.3
[37] grid_3.2.2 clue_0.3-50
[39] tools_3.2.2 rgl_0.95.1367
[41] magrittr_1.5 cluster_2.0.3
[43] rrcov_1.3-8 MASS_7.3-44
[45] data.table_1.9.6 assertthat_0.1
[47] R6_2.1.1
Appreciate any help.
Thanks!
Thanks Mike!
I've push the fix. See https://github.com/RGLab/flowStats/issues/16